It is easier if the linux box has an FTP server. I am not familiar with linux... perhaps it is a given that it is running an FTP server, but most Windows systems do not run an FTP server.
I need to read the config file sequentially and transfer each ... file ... to the particular IP address
You were not specific enough... most people responding have assumed you are trying to automate this but your post did not state that. Do you know how to do this task manually? Show us how you would do it manually.